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a. Order mutants     b .Expression Pattern Lines Help
03Z11UP26
General information
This line was generated from rice cultivar Zhonghua 11.
Reporter gene: GUS.
Seed status:not available.
Morphology
Sterile has been screened at ripening stage for T1 plant . Segregation (mutant: normal) ratio is 6:14 . Phenotype co-segregated with PCR marker (by Li Xingwang).
Biotic Stress
All the T1 (20) plants showed no change to the inoculation of Xanthomonas oryzae pv. oryzae strain PXO61 and PXO339 causing bacterial blight disease (by Tao Zeng and Ke Yinggen).
Flanking Sequence
 
  • Entry_ prefix Types
  •  

    ATL

    ATosL

    ATosR

    ITL

    ITR

     

    TTL

    TTR

    TTosL

    TTosR

    HTL

  • Entry_postfix Types (different primer id)
  •  

    AC1

    ADS-2

    LBT2

    TRB2

    ULB3

     

    XLB3

    XRB3

    URB4

    PFRB4

    NTLB5

     

    TosRS

    SP6

    T7

     

     

  • Additional remarks for Entry_prefix
  •   The first letter means methods for flanking sequence
    ⊕A: Adaptor-PCR ⊕T: TAIL-PCR ⊕I: Inverse-PCR ⊕H: Hi TAIL-PCR
    The middle letters means TAGs
    ⊕T: T-DNA ⊕Tos: Tos17
    The last letter means Left or Right
  • Mutant phenotype(s) mentioned in this entry may not be necessarily linked to the gene(s) identified by the following flanking       sequence(s) due to possible multiple insertions.
  • Blue color is used for rice genomic sequence and orange for vector sequence. Black color is used for neither vector nor rice       genomic sequence that could be caused by recombination.
  •  
    TTL _03Z11UP26 _NTLB5
    Sequence1|Possible location: Chromosome 5 (by You Changjun)
    AAACGTTTCTACTTTGGTCATATAGATACAAACTGCTCTTATATTTGACTAAGTTTATAGATATATAAAATAGTAACATT
    CTCTCAACCAAGACAAATTTATTATGAAAATATATTTAATTATCGATTTGATGAAACTAATTTAGTATTATAAATATTAC
    TATATTTATCTATAAACTTAGTCAAACTGAAAATAGTTTAACTTTGCCAAAGTCAAAATATCTTGTAACTTGAAACGGAG
    GGAGTACATATATAAAAAAAATAATGTGAAAATTTCTTGAGCAGCCTAGCTCTCCTGGAAAGAAAACAAAACAAAATCTT
    AAGCAAAAAATGATTAAATCGATCGATCAGGTTAATTAAGAAATAAGCACGGAATAAGACAAGCATATAAACATCAACTG
    TATAGTGGTGGCAGAAGTATTTTAACACACAACGCACGCGCACCAATCTCATTTCTAGTTTACTCCAAATTAAAGACCAG
    TCAGAATTTTCGCCTTTGCTACTCCTCTATG
    TTL _03Z11UP26 _NTLB5
    Sequence2|Possible location: Chromosome 4 (by You Changjun)
    AATGAACTCTCTTATATAATACAGCACCGGATCTTCGCGTGCGAATCAGGGAAGGTGTGTCTAACCTATCGCTTGTTGGC
    TGATATGACCCTGTTACACTTGCTTTGCGACCACCTTGGACCCTTCTCATGGTTGATTCGCGCCTCCCATGAACCAACAT
    CACCAAAACCCTGGAAAATTCCATTGGTTTTTACAAACAAAATACATATGTTGTTGGCATACTGATAAAATGATAATGAA
    CAGACTGATTTGACTGCTGAATTGCGGATTTAAAATTTTCAGGAAGAATCTAGATTTTTTTTTTTTTTTGATTTTACCCT
    TTGTTGAAAAGTCTCAATAGCCCTTTGGTCTTCTGCTACTGCACTATGGTTCGGCACGAAGTCTACGAGAGTGTCGTGCT
    CCACCATGTTAACATCAATCCACTTGCTTTGAAAACGTGGTTGGAACGTCTTCTTTTTCCACGATGTTCCTCGTGGGTGG
    GGGTCCATGATTGGGACAACTGTCAGCAGAGTCATCTTGAACGAACGCCTTCACCTCATCGCAT
    TTL _03Z11UP26 _NTLB5
    Sequence3|Possible location: Chromosome 5 (by You Changjun)
    TGTCGCCGCTAGGGGGAAAAGGGCCGTAAGCGGGATGGGTGGGGGCATGAGCGTACGTCTGCAGCGGTGGCCGATGAATA
    GCCTTATGATATTTTTATTAAGTGCTGTGTTAGTACTTAGGGGTAAGACCCAAATACACTACTATAGGGACCTTTTAATG
    GAATAAACGTGGAGATAAAGTAAATTTGCCAAAGGGAAACTATGTGGGAAGGGGTAACGGAGGGAGGACATATATAAAAA
    AAATAATGTGAAAATTTCTTGAGCAGCCTAACTCTCCTGGAAAGAAAACAAAACAAAATCTTAAGCAAAAAATGATTAAA
    TCGATCGATCAGGTTAATTAAGAAATAAGCACGGAATAAGACAAGCATATAAACATCAACTGTATAGTGGTGGCAGAAGT
    ATTTTAACACACAACGCACGCGCACCAATCTCATTTCTAGTTTACTCCAAATTAAAGACCAGTCAGAATTTTCGCCTTTG
    CTTCTCCTCTAACGCATAACTTTGGGTGTTAATTTTGATGTCACGGCTGAGGTCTCCGCTTCATTGATCATCCGCCCTCT
    TTTGCCTCTCTAT
    TTL _03Z11UP26 _NTLB5
    Sequence4|Possible location: Chromosome 5 (by Zhang Jian)
    AAACGTTTCTACTTTGGTCATATAGATACAAACTGCTCTTATATTTGACTAAGTTTATAGATATATAAAATAGTAACATT
    CTCTCAACCAAGACAAATTTATTATGAAAATATATTTAATTATCGATTTGATGAAACTAATTTAGTATTATAAATATTAC
    TATATTTATCTATAAACTTAGTCAAACTGAAAATAGTTTAACTTTGCCAAAGTCAAAATATCTTGTAACTTGAAACGGAG
    GGAGTACATATATAAAAAAAATAATGTGAAAATTTCTTGAGCAGCCTAGCTCTCCTGGAAAGAAAACAAAACAAAATCTT
    AAGCAAAAAATGATTAAATCGATCGATCAGGTTAATTAAGAAATAAGCACGGAATAAGACAAGCATATAAACATCAACTG
    TATAGTGGTGGCAGAAGTATTTTAACACACAACGCACGCGCACCAATCTCATTTCTAGTTTACTCCAAATTAAAGACCAG
    TCAGAATTTTCGCCTTTGCTACTCCTCTATG
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    Update by Zhang Chengjun, E-mail:rmd_order@mail.hzau.edu.cn
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